PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G00350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 303aa    MW: 33758.6 Da    PI: 6.6475
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G00350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.72.8e-50141441125
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka....eekewyfFskrdkkyatgkrknratksgyWkat 86 
                      +ppGfrFhPt+eelv +yL++kv+++k++l ++i+e+d+y++ePwdL++       +    e++ewyfFs +d+ky++g+r+nrat++g+Wkat
  OGLUM08G00350.1  14 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQELDLYRIEPWDLQErckyG--GhggdEQTEWYFFSYKDRKYPSGTRTNRATAAGFWKAT 104
                      69****************************.99**************9535441..14443666****************************** PP

              NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhe 125
                      g+dk+vls+ +++++g++ktLvfykgrap+g+ktdW++he
  OGLUM08G00350.1 105 GRDKPVLSSpSTRVIGMRKTLVFYKGRAPNGRKTDWIIHE 144
                      *******9988899*************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-518147IPR003441NAC domain
PROSITE profilePS5100549.91614163IPR003441NAC domain
PfamPF023651.6E-2415144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDRHEEEAGE SPCVPPGFRF HPTEEELVGY YLARKVASQK IDLDIIQELD LYRIEPWDLQ  60
ERCKYGGHGG DEQTEWYFFS YKDRKYPSGT RTNRATAAGF WKATGRDKPV LSSPSTRVIG  120
MRKTLVFYKG RAPNGRKTDW IIHERKKPMP NQQQHRLSYG CIPGSYGAGA YAAVPDNYSL  180
LLHHDNPSFA GRPLMGAAAS ALFANNNNNS VVDHSNILSS ESKLHFSDMM PPLESPTIVD  240
GEGYVSQASS CVDVDQQAGI VDWNLLTSLL PPPAHQLFHH LPSASSSKNS NNISSSGFID  300
DRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4931444137Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106110.0AK110611.1 Oryza sativa Japonica Group cDNA clone:002-168-H04, full insert sequence.
GenBankAP0046540.0AP004654.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0015C07.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankJN6340720.0JN634072.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650248.10.0PREDICTED: NAC domain-containing protein 105
TrEMBLA0A0E0APV70.0A0A0E0APV7_9ORYZ; Uncharacterized protein
STRINGLOC_Os08g01330.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.12e-71vascular related NAC-domain protein 1